JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPHA7_chr6_93235020_93424559	0/0	t0005	3625	10	2	0	5	0	3	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0006	3627	8	8	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0007	3624	7	6	1	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0008	3625	4	0	3	1	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0009	3625	3	0	1	0	1	1	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0010	3625	2	2	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0011	3625	2	0	2	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0012	3625	2	2	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0013	3625	1	1	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0014	3625	1	1	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0015	3625	1	0	0	1	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0016	3625	1	0	0	0	0	1	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0017	3625	1	1	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0018	3625	1	0	0	1	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0019	3625	1	0	0	0	0	1	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0020	3625	1	1	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0021	3625	1	0	1	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0022	3625	1	0	0	1	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0023	3625	1	0	0	1	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0024	3625	1	0	0	1	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0025	3625	1	0	0	0	1	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0026	3627	1	1	0	0	0	0	copy fasta	EPHA7	chr6	93235020	93424559
EPHA8_chr1_22558489_22608595	1/0	t0001	2002	91	0	18	54	6	12	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0002	1997	45	18	9	12	1	5	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0003	2002	40	19	6	12	0	3	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0004	1997	27	10	9	3	1	4	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0005	2002	15	2	6	3	3	1	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0006	2003	15	0	9	2	0	4	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0007	1997	15	0	5	8	1	1	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0008	1997	14	6	2	2	0	4	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/1	t0009	2002	9	2	0	5	0	1	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0010	1997	5	4	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0011	1997	5	5	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0012	1998	5	1	2	0	0	2	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0013	2002	4	3	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0014	2002	3	3	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0015	2003	3	2	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0016	1997	3	2	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0017	1997	3	0	0	3	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0018	2002	2	1	0	0	1	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0019	2002	2	2	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0020	2002	2	0	0	2	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0021	2002	2	0	1	0	1	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0022	1997	2	2	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0023	1997	2	0	2	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0024	1997	2	2	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0025	1997	2	1	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0026	2002	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0027	2002	1	0	0	1	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0028	2002	1	0	0	1	0	0	copy fasta	EPHA8	chr1	22558489	22608595