JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPHA8_chr1_22558489_22608595	0/0	t0029	2002	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0030	2002	1	0	0	1	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0031	2002	1	0	0	1	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0032	1997	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0033	1997	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0034	1997	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0035	2002	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0036	1997	1	0	0	1	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0037	1997	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0038	1997	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0039	1997	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0040	1997	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0041	1997	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0042	1997	1	0	0	1	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0043	1997	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0044	1997	1	0	0	0	0	1	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0045	1997	1	0	0	0	0	1	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0046	1998	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0047	1997	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0048	1997	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	t0049	2002	1	0	0	0	0	1	copy fasta	EPHA8	chr1	22558489	22608595
EPHB1_chr3_134790260_135265467	0/0	t0001	1720	42	18	9	3	1	11	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0002	1721	29	14	7	1	2	5	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	1/0	t0003	1720	12	9	2	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0004	1720	7	3	2	1	0	1	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0005	1720	5	1	0	0	0	4	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/1	t0006	1721	5	1	2	0	0	1	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0007	1720	4	4	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0008	1720	3	2	1	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0009	1721	3	3	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0010	1721	2	0	0	1	0	1	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0011	1721	2	0	2	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0012	1720	2	2	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0013	1720	2	0	2	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0014	1720	2	2	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0015	1721	2	2	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0016	1721	2	0	1	0	0	1	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0017	1720	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0018	1720	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0019	1720	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0020	1720	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0021	1702	1	0	0	0	1	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0022	1720	1	0	1	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0023	1720	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0024	1720	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0025	1720	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	t0026	1721	1	0	1	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB2_chr1_22705839_22926500	1/0	t0001	8075	67	10	15	27	5	9	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0002	8075	39	8	9	16	1	5	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0003	8075	15	1	6	4	1	3	copy fasta	EPHB2	chr1	22705839	22926500