JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPHB2_chr1_22705839_22926500	0/0	t0004	8075	15	1	4	6	1	3	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0005	8075	15	12	3	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0006	8075	7	6	1	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0007	8075	6	6	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0008	8075	6	1	2	0	0	3	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0009	8075	6	4	2	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0010	8075	6	0	1	5	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0011	8075	4	3	1	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0012	8073	4	4	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0013	8075	3	3	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0014	8075	3	3	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0015	8075	3	0	1	0	1	1	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0016	8075	3	0	0	2	0	1	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0017	8075	3	2	1	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0018	8075	2	0	0	2	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0019	8075	2	0	0	2	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0020	8075	2	0	0	2	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0021	8075	2	2	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0022	8081	2	2	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0023	8075	1	0	0	1	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0024	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0025	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0026	8081	1	0	1	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0027	8081	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0028	8075	1	0	0	1	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0029	8075	1	0	1	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0030	8075	1	0	0	0	1	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0031	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0032	8075	1	0	1	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0033	8075	1	0	0	1	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0034	8075	1	0	0	1	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0035	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0036	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0037	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0038	8081	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0039	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0040	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0041	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0042	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0043	8075	1	0	1	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0044	8075	1	0	1	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0045	8075	1	0	0	0	0	1	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0046	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0047	8075	1	0	0	1	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0048	8075	1	0	0	1	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0049	8075	1	0	1	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0050	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0051	8081	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0052	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	t0053	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500