JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPHB2_chr1_22705839_22926500	0/0	t0054	8075	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/1	t0055	8075	1	0	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB3_chr3_184556785_184587408	0/0	t0001	1232	149	18	26	80	10	15	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0002	1226	52	7	7	29	2	7	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	1/1	t0003	1238	23	5	8	5	0	3	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0004	1236	21	19	2	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0005	1226	17	7	6	0	0	4	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0006	1226	16	12	3	0	0	1	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0007	1234	15	1	5	4	1	4	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0008	1232	15	1	2	12	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0009	1230	7	2	1	2	1	1	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0010	1228	7	7	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0011	1234	6	0	0	4	0	2	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0012	1226	6	4	2	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0013	1238	3	3	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0014	1228	2	1	1	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0015	1230	2	2	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0016	1226	1	1	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0017	1232	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0018	1232	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0019	1226	1	1	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0020	1232	1	0	1	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0021	1234	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0022	1238	1	0	1	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0023	1228	1	1	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0024	1232	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0025	1226	1	1	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0026	1226	1	1	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0027	1232	1	0	1	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0028	1226	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0029	1228	1	1	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0030	1232	1	0	0	0	0	1	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0031	1226	1	1	0	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	t0032	1232	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB4_chr7_100797565_100832523	1/1	t0001	1390	179	56	29	62	10	20	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	t0002	1390	119	6	22	76	2	13	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	t0003	1390	34	16	4	7	0	7	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	t0004	1391	9	0	4	2	0	3	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	t0005	1391	7	0	1	3	0	3	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	t0006	1388	6	6	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	t0007	1390	3	3	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	t0008	1388	2	2	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	t0009	1390	1	0	0	1	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	t0010	1390	1	0	0	1	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	t0011	1390	1	0	0	1	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	t0012	1390	1	1	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	t0013	1390	1	0	0	1	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB6_chr7_142850076_142876093	0/1	t0001	931	218	28	60	82	13	34	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	t0002	930	51	44	6	1	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	t0003	930	12	3	2	6	1	0	copy fasta	EPHB6	chr7	142850076	142876093