Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AHCYL1_chr1_109979765_110028742	0/1	t0001	2352	201	57	33	74	12	24	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0002	2352	90	7	18	53	0	12	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0003	2352	17	0	3	14	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0004	2347	11	11	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0005	2353	6	6	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0006	2352	4	0	0	4	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0007	2353	3	1	0	2	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0008	2352	3	0	0	3	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0009	2353	2	2	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0010	2353	2	0	0	0	0	2	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0011	2352	2	2	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0012	2352	1	0	1	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0013	2352	1	0	1	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0014	2352	1	1	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0015	2352	1	1	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0016	2352	1	0	1	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0017	2354	1	1	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0018	2352	1	0	1	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	t0019	2348	1	1	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	1/0	t0020	2351	1	0	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL2_chr7_129220030_129435211	0/1	t0001	3214	88	16	18	39	6	8	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	1/0	t0002	3214	75	25	21	16	2	10	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0003	3214	67	3	11	40	3	10	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0004	3214	9	1	2	3	0	3	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0005	3212	7	7	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0006	3214	6	6	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0007	3214	4	3	1	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0008	3214	3	0	0	3	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0009	3214	3	0	2	0	1	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0010	3214	3	0	0	0	0	3	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0011	3214	3	0	2	0	0	1	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0012	3216	3	2	1	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0013	3216	2	2	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0014	3214	2	2	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0015	3212	2	2	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0016	3216	2	2	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0017	3214	2	2	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0018	3214	2	2	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0019	3214	1	0	0	1	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0020	3214	1	0	1	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0021	3216	1	0	1	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0022	3214	1	1	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0023	3216	1	1	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0024	3216	1	1	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0025	3214	1	0	0	0	0	1	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0026	3214	1	1	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	t0027	3212	1	1	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCY_chr20_34275268_34308355	1/1	t0001	852	260	51	48	118	10	31	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	t0002	852	27	23	4	0	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	t0003	852	7	6	1	0	0	0	copy fasta	AHCY	chr20	34275268	34308355