JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
EPM2AIP1_chr3_36980043_36998131	0/0	t0019	6264	4	1	0	3	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0020	6263	4	3	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0021	6265	4	4	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0022	6265	4	0	0	2	2	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0023	6266	3	2	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0024	6263	3	0	0	2	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	1/0	t0025	6266	3	2	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0026	6265	3	1	1	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0027	6263	2	0	0	0	2	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0028	6265	2	1	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0029	6265	2	1	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0030	6263	2	1	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0031	6265	2	0	0	1	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0032	6264	2	0	0	2	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0033	6256	2	2	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0034	6265	2	2	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0035	6258	2	2	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0036	6269	2	0	1	0	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0037	6260	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0038	6260	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0039	6264	1	0	0	0	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0040	6263	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0041	6263	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0042	6264	1	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0043	6265	1	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0044	6265	1	0	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0045	6267	1	0	0	0	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0046	6265	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0047	6267	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0048	6268	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0049	6265	1	0	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0050	6265	1	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0051	6264	1	0	0	0	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0052	6263	1	0	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0053	6262	1	0	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0054	6263	1	0	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0055	6263	1	0	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0056	6265	1	0	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0057	6266	1	0	0	0	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0058	6264	1	0	0	0	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0059	6266	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0060	6264	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0061	6265	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0062	6265	1	0	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0063	6262	1	0	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0064	6263	1	0	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0065	6262	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0066	6255	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0067	6256	1	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0068	6263	1	0	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131