JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPM2AIP1_chr3_36980043_36998131	0/0	t0069	6264	1	0	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0070	6258	1	1	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0071	6258	1	1	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0072	6258	1	1	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0073	6263	1	0	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0074	6262	1	1	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0075	6263	1	1	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0076	6266	1	0	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0077	6265	1	0	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0078	6266	1	0	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0079	6265	1	1	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0080	6266	1	1	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0081	6265	1	0	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0082	6265	1	0	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0083	6258	1	0	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0084	6258	1	0	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0085	6257	1	1	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0086	6266	1	0	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0087	6268	1	0	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0088	6266	1	0	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0089	6266	1	0	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0090	6266	1	0	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0091	6264	1	0	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0092	6267	1	0	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0093	6268	1	1	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0094	6266	1	0	0	0	0	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0095	6266	1	0	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0096	6263	1	0	0	0	0	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2A_chr6_145620305_145740520	1/0	t0001	2134	148	30	23	78	3	13	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/1	t0002	2134	113	19	16	50	7	20	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0003	2134	30	28	2	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0004	2134	5	4	1	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0005	2139	5	0	0	5	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0006	2134	4	4	0	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0007	2134	3	0	2	0	1	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0008	2134	2	1	1	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0009	2134	2	1	0	0	0	1	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0010	2134	2	0	0	2	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0011	2139	1	0	0	1	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0012	2134	1	1	0	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0013	2134	1	0	1	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0014	2134	1	0	0	1	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0015	2134	1	0	0	0	1	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	t0016	2134	1	0	0	1	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPN2_chr17_19232366_19341715	1/0	t0001	2921	193	61	27	75	4	25	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/1	t0002	2921	26	4	12	0	3	6	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0003	2921	18	0	0	18	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0004	2921	14	14	0	0	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0005	2921	7	0	5	0	1	1	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0006	2921	5	0	2	2	0	1	copy fasta	EPN2	chr17	19232366	19341715