JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPN2_chr17_19232366_19341715	0/0	t0007	2921	4	3	1	0	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0008	2921	3	0	0	3	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0009	2921	2	0	0	2	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0010	2921	2	0	0	0	0	2	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0011	2921	1	1	0	0	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0012	2921	1	0	0	0	0	1	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0013	2921	1	0	0	1	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0014	2921	1	0	0	1	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0015	2921	1	0	0	1	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0016	2921	1	0	1	0	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0017	2921	1	1	0	0	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	t0018	2921	1	0	0	1	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN3_chr17_50527735_50548750	0/0	t0001	1981	204	49	36	82	8	29	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	1/0	t0002	1981	31	5	9	10	2	4	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0003	1981	28	7	6	8	3	4	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/1	t0004	1981	24	7	3	4	2	7	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0005	1981	23	6	11	2	2	2	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0006	1981	9	7	1	0	1	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0007	1981	6	0	0	6	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0008	1981	5	3	2	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0009	1981	4	0	0	4	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0010	1981	3	3	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0011	1981	3	3	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0012	1981	2	2	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0013	1981	2	0	2	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0014	1981	2	2	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0015	1981	2	2	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0016	1981	1	1	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	t0017	1981	1	1	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPOP_chr17_38666703_38679957	0/1	t0001	2116	299	57	64	142	6	29	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0002	2116	16	16	0	0	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0003	2116	8	8	0	0	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0004	2116	7	7	0	0	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0005	2116	5	4	1	0	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0006	2116	3	0	0	3	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0007	2116	2	0	1	0	0	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0008	2116	1	0	0	0	0	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0009	2116	1	0	0	1	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0010	2116	1	0	0	0	0	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0011	2116	1	1	0	0	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0012	2116	1	0	0	0	0	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0013	2116	1	1	0	0	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0014	2116	1	1	0	0	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0015	2116	1	0	0	0	0	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0016	2116	1	0	0	0	0	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0017	2116	1	0	0	0	0	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	t0018	2116	1	1	0	0	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOR_chr19_11372207_11389314	1/1	t0001	885	391	93	74	161	15	46	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	t0002	885	4	0	0	4	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	t0003	885	2	0	0	2	0	0	copy fasta	EPOR	chr19	11372207	11389314