JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPOR_chr19_11372207_11389314	0/0	t0004	885	1	1	0	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	t0005	885	1	1	0	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	t0006	885	1	0	1	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	t0007	885	1	0	0	1	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	t0008	885	1	0	1	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	t0009	885	1	0	0	0	1	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	t0010	885	1	1	0	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPO_chr7_100715468_100728700	0/0	t0001	1081	319	68	55	148	16	32	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	1/1	t0002	1081	37	8	5	11	1	10	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	t0003	1081	8	1	2	0	1	4	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	t0004	1059	3	3	0	0	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	t0005	1081	3	3	0	0	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	t0006	1081	2	2	0	0	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	t0007	1081	2	2	0	0	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	t0008	1081	2	2	0	0	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	t0009	1081	1	0	0	1	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	t0010	1081	1	0	0	1	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	t0011	1081	1	0	0	1	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	t0012	1081	1	1	0	0	0	0	copy fasta	EPO	chr7	100715468	100728700
EPPIN_chr20_45535626_45552401	0/1	t0001	1563	281	58	50	128	13	31	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	1/0	t0002	1563	37	0	9	20	0	7	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0003	1563	30	0	2	25	0	3	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0004	1563	21	1	1	19	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0005	1563	13	11	2	0	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0006	1563	13	4	9	0	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0007	1563	10	1	6	0	1	2	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0008	1563	10	10	0	0	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0009	1563	5	4	1	0	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0010	1553	4	4	0	0	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0011	1563	3	0	0	3	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0012	1563	2	0	0	2	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0013	1563	2	2	0	0	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0014	1563	1	0	1	0	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0015	1563	1	0	0	0	0	1	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0016	1563	1	0	1	0	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0017	1563	1	0	0	1	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0018	1563	1	0	0	1	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0019	1563	1	0	0	1	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	t0020	1563	1	1	0	0	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPK1_chr8_143852324_143883467	1/0	t0001	739	168	47	29	78	6	7	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0002	739	116	2	28	47	6	33	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/1	t0003	739	25	9	6	5	2	2	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0004	738	19	13	0	5	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0005	740	16	3	2	10	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0006	738	13	0	4	7	1	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0007	740	13	2	4	4	0	3	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0008	739	8	0	0	8	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0009	731	8	6	2	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0010	738	6	6	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0011	738	5	0	0	5	0	0	copy fasta	EPPK1	chr8	143852324	143883467