JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPPK1_chr8_143852324_143883467	0/0	t0012	739	5	0	1	1	1	2	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0013	740	4	1	1	2	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0014	739	3	0	3	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0015	740	2	0	0	2	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0016	739	2	2	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0017	739	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0018	739	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0019	739	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0020	739	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0021	740	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0022	739	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0023	739	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0024	738	1	0	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0025	739	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0026	739	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	t0027	739	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPRS1_chr1_219963600_220051505	1/0	t0001	324	193	60	33	74	9	16	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/1	t0002	324	158	31	26	73	3	24	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	t0003	324	4	0	0	4	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	t0004	324	1	0	1	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	t0005	324	1	1	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	t0006	324	1	0	0	1	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPS15L1_chr19_16350247_16476970	0/1	t0001	484	262	78	51	97	7	28	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	t0002	484	5	0	3	0	1	1	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	t0003	484	3	3	0	0	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	1/0	t0004	484	1	0	0	0	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	t0005	484	1	0	0	0	0	1	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	t0006	484	1	0	0	1	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	t0007	484	1	0	0	1	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	t0008	484	1	0	0	1	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	t0009	484	1	1	0	0	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15_chr1_51349263_51524266	1/0	t0001	2473	57	11	18	8	4	15	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0002	2473	17	11	2	0	0	4	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0003	2473	13	13	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/1	t0004	2473	12	5	3	0	3	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0005	2474	10	9	1	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0006	2472	4	4	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0007	2472	4	2	2	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0008	2474	4	0	1	0	3	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0009	2473	4	1	1	0	0	2	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0010	2474	4	4	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0011	2473	4	4	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0012	2470	3	3	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0013	2473	2	0	2	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0014	2474	2	2	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0015	2471	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0016	2472	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0017	2473	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0018	2473	1	0	0	1	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0019	2473	1	0	0	1	0	0	copy fasta	EPS15	chr1	51349263	51524266