JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPSTI1_chr13_42881388_42997241	0/0	t0042	2188	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0043	2192	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0044	2187	1	0	0	0	0	1	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0045	2184	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0046	2184	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0047	2185	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0048	2187	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0049	2184	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0050	2186	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0051	2185	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0052	2184	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0053	2185	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0054	2192	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0055	2192	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0056	2191	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0057	2191	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0058	2191	1	0	1	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0059	2187	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPX_chr17_58187726_58210174	1/1	t0001	572	257	48	42	124	12	29	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	t0002	572	133	36	21	60	3	13	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	t0003	572	12	12	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	t0004	572	1	0	1	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	t0005	572	1	0	0	0	1	0	copy fasta	EPX	chr17	58187726	58210174
EPYC_chr12_90958682_91009972	0/0	t0001	519	212	36	43	114	4	15	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	1/1	t0002	514	125	55	14	42	0	12	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	t0003	519	6	1	5	0	0	0	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	t0004	514	2	0	1	0	0	1	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	t0005	514	1	0	1	0	0	0	copy fasta	EPYC	chr12	90958682	91009972
EQTN_chr9_27279654_27302150	1/0	t0001	165	305	85	62	121	11	25	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/1	t0002	165	138	9	22	76	5	25	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/0	t0003	165	3	0	0	3	0	0	copy fasta	EQTN	chr9	27279654	27302150
ERAL1_chr17_28850016_28866061	0/0	t0001	528	212	54	38	88	6	26	copy fasta	ERAL1	chr17	28850016	28866061
ERAL1_chr17_28850016_28866061	1/1	t0002	528	168	40	22	88	2	14	copy fasta	ERAL1	chr17	28850016	28866061
ERAP1_chr5_96769484_96812945	0/1	t0001	2008	191	46	20	111	3	10	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	1/0	t0002	2016	95	25	15	41	5	8	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0003	2024	59	5	25	18	3	8	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0004	2014	17	2	6	0	4	5	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0005	2008	10	3	3	1	1	2	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0006	2013	9	1	3	0	0	5	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0007	2016	7	0	0	7	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0008	2009	6	0	3	0	2	1	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0009	2012	3	2	1	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0010	2011	3	3	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0011	2014	2	0	2	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0012	2020	2	0	0	2	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0013	2028	2	2	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0014	2008	1	0	1	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0015	2008	1	0	0	1	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0016	2016	1	0	1	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0017	2008	1	0	0	0	0	1	copy fasta	ERAP1	chr5	96769484	96812945