JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERAP1_chr5_96769484_96812945	0/0	t0018	2008	1	0	0	0	0	1	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0019	2008	1	1	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0020	2008	1	0	0	0	0	1	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0021	2008	1	1	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0022	2008	1	0	0	1	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	t0023	2024	1	1	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP2_chr5_96871500_96924703	1/1	t0001	2249	167	37	35	67	9	17	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0002	2249	99	21	20	45	2	11	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0003	2250	29	2	1	24	0	2	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0004	2252	24	0	2	20	0	2	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0005	2251	10	0	5	0	3	2	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0006	2250	9	8	1	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0007	2250	7	7	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0008	2250	7	2	0	3	0	2	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0009	2253	7	2	1	4	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0010	2248	5	0	4	1	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0011	2250	5	3	2	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0012	2252	4	4	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0013	2252	3	0	1	0	0	2	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0014	151	2	0	0	2	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0015	2251	2	2	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0016	2251	2	0	0	2	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0017	2237	2	0	0	2	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0018	2251	2	0	0	2	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0019	2249	1	0	0	0	0	1	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0020	2249	1	0	1	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0021	2251	1	0	0	0	0	1	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0022	2250	1	0	0	0	0	1	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0023	2249	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0024	2249	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0025	2249	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0026	2249	1	0	0	1	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0027	2249	1	0	1	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0028	2249	1	0	0	1	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0029	2249	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	t0030	2249	1	0	0	0	0	1	copy fasta	ERAP2	chr5	96871500	96924703
ERAS_chrX_48821513_48834869	1/1	t0001	125	307	72	62	128	13	30	copy fasta	ERAS	chrX	48821513	48834869
ERAS_chrX_48821513_48834869	0/0	t0002	125	1	0	0	1	0	0	copy fasta	ERAS	chrX	48821513	48834869
ERBB2_chr17_39695064_39733658	0/0	t0001	790	296	73	56	127	16	24	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	t0002	790	15	11	1	0	0	3	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	t0003	790	2	0	0	2	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	t0004	790	1	0	0	0	0	1	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	t0005	790	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	t0006	790	1	0	1	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	t0007	790	1	1	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	t0008	790	1	1	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB3_chr12_56075165_56108505	0/1	t0001	1590	131	4	32	69	5	20	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0002	1588	76	14	18	37	3	4	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0003	1589	74	20	21	19	7	7	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0004	1591	32	1	9	11	3	8	copy fasta	ERBB3	chr12	56075165	56108505