JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERC1_chr12_986223_1500931	0/0	t0024	5987	1	0	0	0	1	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0025	5996	1	0	0	0	1	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0026	5991	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0027	5988	1	0	0	0	1	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0028	5976	1	0	0	0	1	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0029	5988	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0030	5976	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0031	5998	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0032	5988	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0033	5976	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0034	5995	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0035	6014	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0036	5995	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0037	5995	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0038	5975	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0039	5985	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0040	5994	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0041	5996	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0042	6002	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0043	5996	1	0	0	0	1	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0044	5988	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0045	5997	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0046	5999	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0047	5991	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0048	5988	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0049	6000	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0050	5990	1	0	0	0	0	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0051	5985	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0052	6000	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0053	6002	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0054	5998	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0055	5977	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0056	6003	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0057	5992	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0058	5996	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0059	5986	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0060	5976	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0061	5976	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0062	5976	1	0	0	0	1	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0063	5976	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0064	5965	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0065	6000	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0066	5995	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0067	5993	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0068	5985	1	0	0	0	0	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0069	5976	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0070	5986	1	0	0	0	0	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0071	5992	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0072	5986	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0073	5977	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931