JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERC1_chr12_986223_1500931	0/0	t0074	5975	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0075	5985	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0076	5977	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0077	5980	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0078	5959	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0079	5966	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0080	5970	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0081	5980	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0082	5958	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0083	5981	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0084	5978	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0085	5971	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0086	5976	1	0	0	0	0	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0087	5982	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0088	5974	1	0	0	0	0	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0089	5950	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0090	5979	1	0	0	0	1	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0091	5975	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0092	5971	1	0	0	0	0	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0093	5971	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0094	5971	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0095	5972	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0096	5971	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0097	5972	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0098	5978	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0099	5960	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0100	5959	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0101	5967	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0102	5959	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0103	5988	1	0	0	0	0	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0104	5977	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0105	5973	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0106	5958	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0107	5969	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0108	5959	1	0	0	0	0	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0109	5959	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0110	5958	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0111	5958	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0112	5970	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0113	5972	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0114	5970	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0115	5985	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0116	5979	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0117	5966	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0118	5958	1	0	0	0	1	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0119	5958	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0120	5968	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0121	5970	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0122	5976	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0123	5935	1	0	0	0	0	1	copy fasta	ERC1	chr12	986223	1500931