JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERC1_chr12_986223_1500931	0/0	t0124	5984	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0125	5956	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0126	5974	1	0	0	0	0	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0127	5957	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0128	5959	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0129	5959	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0130	5978	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0131	5972	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0132	5978	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0133	5977	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0134	5967	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0135	5972	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0136	5977	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	1/0	t0137	5958	1	0	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0138	5958	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0139	5983	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0140	5974	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0141	5972	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC2_chr3_55503311_56473467	0/0	t0001	3365	25	16	6	0	1	2	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/1	t0002	3365	21	12	3	1	1	3	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	1/0	t0003	3366	11	2	4	2	0	2	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	t0004	3366	4	3	1	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	t0005	3364	3	1	1	1	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	t0006	3364	2	0	2	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	t0007	3365	2	2	0	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	t0008	3365	1	0	1	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	t0009	3365	1	1	0	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	t0010	3364	1	1	0	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	t0011	3365	1	0	0	0	0	1	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	t0012	3365	1	1	0	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	t0013	3365	1	1	0	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERCC1_chr19_45402334_45428917	0/0	t0001	2487	128	25	16	79	1	7	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	1/1	t0002	2486	107	4	21	54	7	19	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0003	2485	64	15	11	36	0	2	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0004	2482	40	13	10	3	5	9	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0005	2485	10	9	1	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0006	2485	8	6	2	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0007	2487	8	0	0	5	0	3	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0008	2485	6	5	1	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0009	2485	5	5	0	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0010	2506	4	0	3	0	0	1	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0011	2486	3	0	0	0	1	2	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0012	2487	3	0	1	0	1	1	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0013	2486	3	0	0	2	0	1	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0014	2486	3	0	0	3	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0015	2485	3	3	0	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0016	2482	2	0	0	0	0	2	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0017	2486	2	0	2	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0018	2485	2	0	2	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0019	2486	2	1	1	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917