JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERCC1_chr19_45402334_45428917	0/0	t0020	2485	1	1	0	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0021	2482	1	0	1	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0022	2482	1	0	1	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0023	2486	1	0	1	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0024	2485	1	1	0	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0025	2486	1	1	0	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0026	2485	1	1	0	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0027	2485	1	1	0	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0028	2487	1	0	0	1	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0029	2486	1	0	0	1	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0030	2486	1	0	0	0	0	1	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0031	2485	1	0	0	1	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0032	2487	1	0	0	1	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0033	2482	1	0	0	0	1	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0034	2482	1	0	0	0	0	1	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0035	2482	1	0	0	0	0	1	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	t0036	2487	1	1	0	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC2_chr19_45344837_45375573	0/1	t0001	1825	178	59	25	76	2	15	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	1/0	t0002	1826	123	4	32	67	5	14	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0003	1820	47	5	11	16	8	7	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0004	1825	7	7	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0005	1820	6	6	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0006	1827	6	0	1	3	0	2	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0007	1826	5	1	2	2	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0008	1821	2	0	0	1	0	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0009	1822	2	2	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0010	1820	2	0	0	0	1	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0011	1825	2	0	0	2	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0012	1826	2	1	1	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0013	1826	2	2	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0014	1825	2	2	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0015	1820	2	0	0	0	0	2	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0016	1825	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0017	1820	1	0	1	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0018	1826	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0019	1820	1	0	0	0	0	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0020	1820	1	0	1	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0021	1820	1	0	0	0	0	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0022	1820	1	1	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0023	1821	1	1	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0024	1826	1	1	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0025	1826	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0026	1826	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0027	1825	1	1	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0028	1826	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0029	1825	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0030	1808	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0031	1825	1	1	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0032	1826	1	0	1	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0033	1826	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573