JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERCC2_chr19_45344837_45375573	0/0	t0034	1811	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0035	1826	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0036	1825	1	1	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0037	1821	1	1	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0038	1826	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	t0039	1825	1	0	1	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC3_chr2_127252290_127299144	1/1	t0001	370	335	86	63	130	8	46	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	t0002	370	6	5	1	0	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	t0003	370	4	0	4	0	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	t0004	370	3	1	2	0	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	t0005	370	2	0	0	2	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC4_chr16_13915154_13957348	1/1	t0001	4014	176	25	35	89	7	18	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0002	4012	80	13	6	46	4	11	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0003	4013	11	0	8	0	3	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0004	4014	10	9	1	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0005	4014	10	10	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0006	4014	7	7	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0007	4014	7	0	7	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0008	4014	5	3	2	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0009	4012	4	4	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0010	4012	3	3	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0011	4014	3	0	0	3	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0012	4013	3	3	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0013	4014	3	3	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0014	4012	2	0	0	2	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0015	4013	2	1	1	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0016	4014	1	0	0	0	0	1	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0017	4014	1	1	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0018	4014	1	0	0	0	0	1	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0019	4014	1	0	0	1	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0020	4014	1	0	1	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0021	4012	1	0	0	1	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0022	4014	1	0	1	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0023	4014	1	0	0	0	0	1	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0024	4014	1	1	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0025	4014	1	1	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0026	4013	1	1	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0027	4013	1	0	0	1	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0028	4014	1	0	0	1	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	t0029	4013	1	1	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC5_chr13_102841032_102880995	0/1	t0001	328	180	18	40	86	7	28	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	1/0	t0002	328	175	59	22	76	9	8	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	t0003	328	17	9	0	8	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	t0004	328	8	5	3	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	t0005	328	6	4	0	2	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	t0006	328	4	0	1	0	0	3	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	t0007	328	1	0	0	0	0	1	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	t0008	328	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	t0009	328	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	t0010	328	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995