JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERCC6L2_chr9_95870691_96023447	0/1	t0001	5598	63	3	15	35	1	8	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0002	5593	49	5	10	23	3	8	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0003	5596	44	4	14	17	1	8	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0004	5594	15	4	3	5	2	1	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0005	5594	13	0	7	5	0	1	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0006	5597	12	2	2	6	0	2	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0007	5595	11	7	0	4	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0008	5588	11	0	0	11	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0009	5593	10	0	0	10	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0010	5596	8	7	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0011	5593	6	0	5	0	1	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0012	5588	6	0	4	1	1	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0013	5595	6	0	4	2	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0014	5599	6	2	1	2	1	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0015	5598	6	6	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0016	5588	5	0	0	5	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0017	5598	5	5	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0018	5593	5	0	0	5	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0019	5598	5	0	0	5	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0020	5593	4	4	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0021	5587	4	0	0	4	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0022	5597	3	3	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0023	5597	3	3	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0024	5598	3	0	0	3	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0025	5597	3	2	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0026	5600	3	0	0	0	0	3	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0027	5598	3	3	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0028	5597	2	0	0	2	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0029	5596	2	0	1	0	1	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0030	5597	2	1	0	0	1	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0031	5594	2	2	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0032	5599	2	1	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0033	5594	2	1	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0034	5594	2	2	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0035	5597	2	0	0	1	0	1	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0036	5599	2	0	2	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0037	5595	2	2	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0038	5596	2	1	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0039	5593	1	0	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0040	5598	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0041	5586	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0042	5588	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0043	5589	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0044	5596	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0045	5597	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0046	5589	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0047	5596	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0048	5596	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0049	5591	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0050	5596	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447