JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERCC6L2_chr9_95870691_96023447	0/0	t0051	5596	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0052	5593	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	1/0	t0053	5593	1	0	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0054	5593	1	0	0	0	0	1	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0055	5586	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0056	5594	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0057	5595	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0058	5595	1	0	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0059	5597	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0060	5589	1	0	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0061	5597	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0062	5594	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0063	5594	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0064	5593	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0065	5595	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0066	5598	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0067	5593	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0068	5594	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0069	5599	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0070	5594	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0071	5594	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0072	5593	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0073	5594	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0074	5597	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0075	5600	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0076	5594	1	0	0	0	0	1	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0077	5594	1	0	0	0	0	1	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0078	5596	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0079	5598	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0080	5598	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0081	5594	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0082	5593	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0083	5594	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0084	5588	1	0	0	0	0	1	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0085	5597	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0086	5598	1	0	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0087	5599	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0088	5593	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0089	5597	1	0	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0090	5598	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0091	5599	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0092	5599	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0093	5596	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0094	5597	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0095	5594	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	t0096	5597	1	0	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L_chrX_72199665_72244027	0/0	t0001	466	96	20	11	57	0	8	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/1	t0002	466	94	13	8	63	0	9	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	1/0	t0003	466	81	29	27	5	9	10	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	t0004	466	7	6	1	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027