JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERCC6L_chrX_72199665_72244027	0/0	t0005	466	2	0	0	2	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	t0006	459	2	2	0	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	t0007	473	2	0	0	1	0	1	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	t0008	473	1	1	0	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	t0009	487	1	1	0	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6_chr10_49449470_49544121	1/0	t0001	4520	125	47	25	35	2	15	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0002	4520	86	4	20	49	4	9	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0003	4520	46	2	5	30	0	9	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0004	4520	42	1	5	33	2	1	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0005	4521	14	0	0	14	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/1	t0006	4520	8	6	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0007	4517	7	0	3	0	0	4	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0008	4520	6	4	2	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0009	4520	5	2	2	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0010	4520	5	0	0	5	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0011	4520	4	4	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0012	4521	3	0	0	3	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0013	4520	3	2	1	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0014	4520	3	3	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0015	4520	2	0	0	2	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0016	4520	2	2	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0017	4520	2	2	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0018	4520	2	2	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0019	4520	2	0	0	2	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0020	4520	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0021	4520	1	0	1	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0022	4520	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0023	4520	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0024	4520	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0025	4520	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0026	4520	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0027	4517	1	0	1	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0028	4520	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0029	4520	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0030	4520	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0031	4520	1	0	0	0	0	1	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0032	4520	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0033	4520	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0034	4520	1	0	0	0	0	1	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0035	4520	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0036	4520	1	0	1	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0037	4520	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0038	4521	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0039	4520	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	t0040	4521	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49510198_49544121	1/0	t0001	310	306	64	59	135	8	39	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	t0002	310	64	1	8	52	2	1	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	t0003	310	17	16	1	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/1	t0004	310	12	7	2	2	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	t0005	310	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121