Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AHNAK2_chr14_104932253_104983374	0/0	t0013	948	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	t0014	948	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	t0015	948	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK_chr11_62510902_62551806	1/1	t0001	1089	174	74	27	49	4	18	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	t0002	1089	4	1	3	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	t0003	1089	2	2	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	t0004	1089	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	t0005	1089	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	t0006	1089	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	t0007	1089	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	t0008	1089	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	t0009	1089	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHRR_chr5_316714_443285	0/0	t0001	3643	51	15	7	20	2	7	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	1/0	t0002	3568	30	1	4	20	1	3	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0003	3568	25	0	5	15	0	5	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0004	3641	17	0	10	0	1	6	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0005	3659	13	1	7	5	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0006	3643	12	1	6	3	1	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0007	3643	11	10	1	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0008	3566	7	0	7	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0009	3603	6	5	1	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0010	3568	5	1	1	3	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0011	3643	5	0	0	5	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/1	t0012	3641	5	0	1	0	2	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0013	3643	5	5	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0014	3643	4	4	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0015	3566	4	0	1	2	1	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0016	3659	4	0	0	3	0	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0017	3603	3	3	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0018	3603	3	3	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0019	3568	3	0	1	2	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0020	3568	2	2	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0021	3641	2	2	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0022	3643	2	2	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0023	3568	2	2	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0024	3643	2	2	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0025	3659	2	0	1	0	0	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0026	3643	2	0	2	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0027	3643	2	2	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0028	3567	2	0	1	0	1	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0029	3643	2	0	1	0	1	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0030	3641	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0031	3641	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0032	3568	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0033	3603	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0034	3643	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0035	3643	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0036	3718	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0037	3620	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0038	3641	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285