JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERCC6_chr10_49510198_49544121	0/0	t0006	310	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	t0007	310	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC8_chr5_60861454_60950070	0/0	t0001	8225	41	4	7	24	3	3	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	1/0	t0002	8224	34	0	8	17	1	7	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0003	8224	21	0	6	13	2	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0004	8221	14	0	2	12	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/1	t0005	8226	11	9	0	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0006	8225	10	1	4	0	0	5	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0007	8222	10	10	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0008	8210	9	1	4	0	3	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0009	8225	9	0	3	3	0	3	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0010	8223	9	9	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0011	8225	7	0	0	6	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0012	8225	6	6	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0013	8226	5	0	3	1	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0014	8224	5	5	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0015	8228	4	2	1	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0016	8210	4	4	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0017	8210	4	0	4	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0018	8227	3	2	1	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0019	8224	3	0	1	2	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0020	8224	3	3	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0021	8224	3	0	0	3	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0022	8221	3	3	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0023	8222	3	3	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0024	8221	2	0	1	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0025	8231	2	0	1	0	1	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0026	8232	2	0	1	0	1	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0027	8226	2	2	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0028	8228	2	2	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0029	8226	2	2	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0030	8224	2	0	0	0	2	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0031	8222	2	0	0	2	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0032	8211	2	2	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0033	8210	2	0	1	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0034	8226	2	1	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0035	8227	2	0	1	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0036	8227	2	0	0	0	0	2	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0037	8224	2	2	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0038	8225	2	0	0	1	1	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0039	8225	2	0	0	2	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0040	8225	2	0	0	2	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0041	8226	2	0	0	1	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0042	8224	2	1	1	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0043	8224	1	0	1	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0044	8211	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0045	8225	1	0	0	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0046	8226	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0047	8227	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0048	8227	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070