JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERCC8_chr5_60861454_60950070	0/0	t0049	8226	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0050	8226	1	0	0	0	1	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0051	8228	1	0	0	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0052	8224	1	0	0	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0053	8225	1	0	1	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0054	8226	1	0	0	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0055	8210	1	0	1	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0056	8210	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0057	8225	1	0	0	0	1	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0058	8227	1	0	0	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0059	8228	1	0	1	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0060	8227	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0061	8224	1	0	0	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0062	8225	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0063	8225	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0064	8225	1	0	0	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0065	8225	1	0	1	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0066	8226	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0067	8226	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0068	8228	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0069	8225	1	0	1	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0070	8225	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0071	8224	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0072	8224	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0073	8224	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0074	8225	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0075	8225	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0076	8201	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0077	8225	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0078	8225	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0079	8224	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0080	8224	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0081	8224	1	0	0	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0082	8219	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0083	8223	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0084	8221	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	t0085	8226	1	1	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
EREG_chr4_74360145_74393749	0/0	t0001	4106	154	31	26	73	8	16	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	1/0	t0002	4106	91	15	12	48	4	11	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0003	4106	37	11	3	18	0	5	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0004	4105	13	10	0	3	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0005	4106	6	0	0	6	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0006	4104	6	5	0	0	0	1	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0007	4105	5	5	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0008	4106	5	0	0	5	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0009	4104	4	2	2	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0010	4106	4	0	0	4	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0011	4107	3	3	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0012	4105	3	2	1	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0013	4106	3	0	0	0	0	3	copy fasta	EREG	chr4	74360145	74393749