JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EREG_chr4_74360145_74393749	0/0	t0014	4105	3	2	1	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0015	4105	2	2	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0016	4105	2	2	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0017	4106	2	0	0	2	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0018	4106	1	1	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0019	4105	1	1	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0020	4105	1	1	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0021	4106	1	0	0	1	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0022	4106	1	0	1	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0023	4106	1	1	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0024	4104	1	1	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0025	4105	1	0	0	1	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0026	4104	1	1	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/1	t0027	4106	1	0	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0028	4106	1	0	0	1	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0029	4106	1	1	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0030	4106	1	0	0	1	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0031	4106	1	0	0	1	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	t0032	4106	1	1	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
ERFE_chr2_238153970_238173890	0/0	t0001	1874	161	19	24	105	6	7	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0002	1874	105	5	24	57	3	16	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0003	1874	86	7	12	49	4	14	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	1/1	t0004	1875	40	10	10	4	4	10	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0005	1874	25	21	4	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0006	1873	10	9	1	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0007	1874	8	8	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0008	1874	3	1	2	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0009	1874	2	2	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0010	1874	2	2	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0011	1874	2	2	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0012	1874	1	1	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0013	1874	1	0	0	0	1	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0014	1875	1	1	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0015	1874	1	1	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0016	1874	1	1	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0017	1874	1	0	0	1	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0018	1875	1	1	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0019	1874	1	0	0	1	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0020	1874	1	0	0	1	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0021	1874	1	0	1	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0022	1874	1	0	0	0	0	1	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	t0023	1874	1	1	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFL_chr19_41902704_41933449	1/0	t0001	948	122	5	26	59	10	21	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	t0002	951	97	65	5	19	0	8	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/1	t0003	948	81	10	24	33	5	8	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	t0004	952	13	0	0	13	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	t0005	951	7	7	0	0	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	t0006	947	1	0	0	1	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	t0007	951	1	1	0	0	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	t0008	948	1	0	0	1	0	0	copy fasta	ERFL	chr19	41902704	41933449