JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERFL_chr19_41902704_41933449	0/0	t0009	951	1	0	0	0	0	1	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	t0010	951	1	0	0	1	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	t0011	948	1	1	0	0	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	t0012	948	1	1	0	0	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	t0013	948	1	0	0	0	1	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	t0014	948	1	0	0	1	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	t0015	948	1	0	1	0	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERF_chr19_42242569_42260128	1/1	t0001	1026	256	70	42	95	13	34	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	t0002	1026	7	1	2	1	1	2	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	t0003	1026	2	0	0	2	0	0	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	t0004	1026	1	0	0	1	0	0	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	t0005	1026	1	0	0	1	0	0	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	t0006	1026	1	1	0	0	0	0	copy fasta	ERF	chr19	42242569	42260128
ERG28_chr14_75644791_75665876	1/1	t0001	1898	299	46	57	154	11	29	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0002	1895	92	31	18	30	3	10	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0003	1895	8	0	0	8	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0004	1895	8	8	0	0	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0005	1895	2	0	0	0	0	2	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0006	1898	2	2	0	0	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0007	1898	1	0	1	0	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0008	1898	1	0	0	1	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0009	1898	1	0	0	0	0	1	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0010	1895	1	0	0	1	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0011	1898	1	1	0	0	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0012	1898	1	1	0	0	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0013	1898	1	0	1	0	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0014	1898	1	0	1	0	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	t0015	1898	1	1	0	0	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERGIC1_chr5_172829251_172957683	0/0	t0001	2033	178	15	40	97	6	20	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	1/0	t0002	2031	64	7	24	14	4	14	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0003	2036	29	24	2	1	0	2	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0004	2032	10	1	0	9	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0005	2035	10	9	1	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0006	2035	8	7	0	1	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0007	2031	3	3	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0008	2036	3	3	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0009	2043	2	2	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0010	2031	2	2	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0011	2031	2	0	0	0	0	2	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0012	2038	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0013	2035	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0014	2035	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0015	2031	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0016	2035	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0017	2033	1	0	0	0	0	1	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0018	2031	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0019	2033	1	0	1	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0020	2033	1	0	1	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/1	t0021	2031	1	0	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0022	2033	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683