JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERGIC1_chr5_172829251_172957683	0/0	t0023	2031	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0024	2033	1	0	0	0	0	1	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0025	2033	1	0	0	1	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0026	2033	1	0	0	1	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0027	2036	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0028	2033	1	0	1	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0029	2031	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0030	2035	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0031	2034	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0032	2030	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0033	2035	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	t0034	2030	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC2_chr12_29332352_29386172	0/0	t0001	3900	171	18	38	83	8	24	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0002	3902	56	3	14	36	2	1	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0003	3901	19	1	4	13	0	1	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0004	3900	17	0	0	16	0	1	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0005	3902	16	12	2	0	0	2	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0006	3902	14	1	2	8	1	2	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0007	3902	11	5	0	5	0	1	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0008	3903	10	8	2	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0009	3899	9	0	3	5	0	1	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0010	3900	9	8	1	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0011	3902	8	0	0	6	0	2	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0012	3902	7	7	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0013	3902	7	7	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0014	3901	5	0	0	5	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0015	3901	4	1	1	2	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0016	3901	3	3	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0017	3903	3	0	0	3	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0018	3901	2	2	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0019	3903	2	2	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0020	3900	1	1	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0021	3902	1	1	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0022	3899	1	0	0	1	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0023	3902	1	0	0	1	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0024	3901	1	0	0	1	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0025	3902	1	1	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0026	3902	1	0	0	0	0	1	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0027	3902	1	0	0	1	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0028	3902	1	0	1	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0029	3901	1	1	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0030	3902	1	0	0	1	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0031	3899	1	0	0	0	1	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0032	3899	1	0	0	0	0	1	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0033	3901	1	0	0	1	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0034	3902	1	0	0	1	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0035	3902	1	0	0	1	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0036	3899	1	0	0	0	0	1	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0037	3899	1	0	0	1	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0038	3900	1	0	1	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172