JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERGIC2_chr12_29332352_29386172	0/0	t0039	3900	1	0	0	1	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0040	3902	1	0	1	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0041	3903	1	1	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0042	3902	1	1	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0043	3900	1	0	1	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0044	3903	1	1	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0045	3902	1	0	1	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0046	3902	1	1	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0047	3900	1	0	0	1	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0048	3902	1	1	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0049	3900	1	0	0	1	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	t0050	3902	1	1	0	0	0	0	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC3_chr20_35537078_35562634	1/1	t0001	151	357	89	60	148	16	42	copy fasta	ERGIC3	chr20	35537078	35562634
ERGIC3_chr20_35537078_35562634	0/0	t0002	151	5	1	4	0	0	0	copy fasta	ERGIC3	chr20	35537078	35562634
ERGIC3_chr20_35537078_35562634	0/0	t0003	151	1	1	0	0	0	0	copy fasta	ERGIC3	chr20	35537078	35562634
ERGIC3_chr20_35537078_35562634	0/0	t0004	151	1	1	0	0	0	0	copy fasta	ERGIC3	chr20	35537078	35562634
ERG_chr21_38375036_38503477	0/0	t0001	3465	160	35	29	75	5	16	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/1	t0002	3460	64	25	9	27	0	2	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0003	3460	46	4	10	18	5	9	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	1/0	t0004	3465	29	1	6	16	3	2	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0005	3460	8	1	1	6	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0006	3460	7	1	1	3	0	2	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0007	3460	5	0	4	1	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0008	3464	5	0	1	4	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0009	3460	4	0	0	4	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0010	3465	4	0	1	0	1	2	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0011	3460	4	4	0	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0012	3461	3	2	1	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0013	3460	2	0	0	2	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0014	3460	2	0	1	1	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0015	3465	1	0	0	1	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0016	3460	1	1	0	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0017	3460	1	0	0	1	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0018	3464	1	0	0	1	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0019	3465	1	0	0	1	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0020	3465	1	0	0	1	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0021	3465	1	0	0	0	0	1	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0022	3465	1	1	0	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0023	3465	1	0	0	0	0	1	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0024	3465	1	0	1	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0025	3465	1	0	0	0	0	1	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0026	3465	1	0	1	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0027	3465	1	1	0	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0028	3460	1	1	0	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0029	3460	1	1	0	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0030	3460	1	1	0	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	t0031	3465	1	1	0	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERH_chr14_69375128_69403299	1/1	t0001	477	390	89	62	175	18	44	copy fasta	ERH	chr14	69375128	69403299
ERH_chr14_69375128_69403299	0/0	t0002	478	3	3	0	0	0	0	copy fasta	ERH	chr14	69375128	69403299
ERH_chr14_69375128_69403299	0/0	t0003	478	3	1	0	1	0	1	copy fasta	ERH	chr14	69375128	69403299