JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERH_chr14_69375128_69403299	0/0	t0004	477	1	1	0	0	0	0	copy fasta	ERH	chr14	69375128	69403299
ERH_chr14_69375128_69403299	0/0	t0005	477	1	0	0	0	0	1	copy fasta	ERH	chr14	69375128	69403299
ERI1_chr8_8997897_9038338	0/0	t0001	3472	113	6	33	58	4	12	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0002	3473	55	15	8	26	0	6	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0003	3472	47	0	2	41	1	3	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/1	t0004	3473	45	20	11	0	4	9	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0005	3472	20	0	0	16	0	4	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0006	3473	19	11	6	0	2	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0007	3473	10	0	0	10	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0008	3472	9	0	0	9	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0009	3473	7	0	0	2	0	5	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0010	3473	7	0	0	7	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0011	3473	6	0	3	0	2	1	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0012	3473	5	0	0	5	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0013	3472	4	0	0	4	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0014	3473	4	4	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0015	3473	4	4	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0016	3473	4	0	2	1	1	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0017	3473	4	0	0	4	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0018	3473	4	4	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0019	3473	3	2	1	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0020	3472	2	0	0	2	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0021	3472	2	0	2	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0022	3472	2	0	2	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0023	3473	2	2	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0024	3473	2	0	2	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0025	3473	2	2	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0026	3473	2	2	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0027	3473	2	0	2	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0028	3473	2	0	2	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0029	3473	2	0	0	2	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0030	3473	2	2	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0031	3473	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0032	3472	1	0	1	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0033	3472	1	0	1	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0034	3472	1	0	0	0	0	1	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0035	3472	1	0	0	0	0	1	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0036	3472	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0037	3472	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0038	3472	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0039	3472	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0040	3472	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0041	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0042	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0043	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0044	3473	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0045	3473	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0046	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0047	3473	1	0	0	0	0	1	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0048	3473	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338