JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERI1_chr8_8997897_9038338	1/0	t0049	3472	1	0	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0050	3473	1	0	1	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0051	3473	1	0	1	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0052	3473	1	0	0	0	0	1	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0053	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0054	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0055	3473	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0056	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0057	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0058	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0059	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0060	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0061	3473	1	0	0	0	0	1	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0062	3473	1	0	0	0	0	1	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0063	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	t0064	3473	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI2_chr16_20791340_20811472	1/1	t0001	1427	354	82	68	147	17	38	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	t0002	1427	44	9	4	23	1	7	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	t0003	1427	4	0	0	4	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	t0004	1427	4	0	0	4	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	t0005	1427	1	0	0	1	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	t0006	1427	1	1	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	t0007	1427	1	1	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	t0008	1427	1	1	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	t0009	1427	1	0	0	1	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	t0010	1427	1	0	0	0	0	1	copy fasta	ERI2	chr16	20791340	20811472
ERI3_chr1_44216070_44360257	1/1	t0001	720	333	81	60	152	8	30	copy fasta	ERI3	chr1	44216070	44360257
ERI3_chr1_44216070_44360257	0/0	t0002	720	3	3	0	0	0	0	copy fasta	ERI3	chr1	44216070	44360257
ERI3_chr1_44216070_44360257	0/0	t0003	720	1	0	0	1	0	0	copy fasta	ERI3	chr1	44216070	44360257
ERI3_chr1_44216070_44360257	0/0	t0004	720	1	0	0	1	0	0	copy fasta	ERI3	chr1	44216070	44360257
ERI3_chr1_44216070_44360257	0/0	t0005	720	1	1	0	0	0	0	copy fasta	ERI3	chr1	44216070	44360257
ERI3_chr1_44216070_44360257	0/0	t0006	720	1	1	0	0	0	0	copy fasta	ERI3	chr1	44216070	44360257
ERICH1_chr8_659200_736224	1/1	t0001	467	248	53	46	119	5	23	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	t0002	467	127	37	27	24	13	26	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	t0003	467	1	0	0	1	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	t0004	467	1	0	1	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	t0005	467	1	0	0	0	0	1	copy fasta	ERICH1	chr8	659200	736224
ERICH2_chr2_170765378_170803977	1/1	t0001	388	383	86	66	171	18	40	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	t0002	388	6	6	0	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	t0003	388	1	0	0	1	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH3_chr1_74563123_74678792	0/1	t0001	2609	184	61	40	57	6	19	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	t0002	2609	74	7	15	40	2	10	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	1/0	t0003	2609	9	8	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	t0004	2609	6	5	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	t0005	2609	4	3	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	t0006	2609	3	3	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	t0007	2609	2	1	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	t0008	2609	1	0	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	t0009	2609	1	0	0	1	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	t0010	2609	1	0	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792