JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERICH3_chr1_74563123_74678792	0/0	t0011	2609	1	0	0	1	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	t0012	2609	1	0	0	1	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	t0013	2609	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	t0014	2609	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	t0015	2609	1	0	0	0	0	1	copy fasta	ERICH3	chr1	74563123	74678792
ERICH4_chr19_41438156_41449765	1/0	t0001	556	307	66	49	144	13	34	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/1	t0002	556	72	0	7	52	2	10	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	t0003	555	19	18	1	0	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	t0004	556	12	11	1	0	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	t0005	556	6	0	4	0	1	1	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	t0006	556	2	0	0	2	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	t0007	556	1	0	0	1	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	t0008	556	1	0	0	1	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	t0009	556	1	0	0	0	0	1	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	t0010	556	1	1	0	0	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH5_chr8_98059568_98098609	1/0	t0001	379	248	59	47	102	10	29	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/1	t0002	379	184	27	27	102	8	19	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	t0003	379	3	1	2	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	t0004	379	3	3	0	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	t0005	379	3	3	0	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	t0006	379	1	1	0	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH6B_chr13_45536294_45620739	1/1	t0001	334	267	44	46	129	10	36	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	t0002	334	55	45	8	0	0	2	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	t0003	321	2	2	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	t0004	334	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	t0005	334	1	0	0	1	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6_chr3_150654885_150708920	1/1	t0001	30	326	87	60	125	12	40	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	t0002	30	22	7	2	11	0	2	copy fasta	ERICH6	chr3	150654885	150708920
ERLEC1_chr2_53782044_53823796	1/1	t0001	995	280	63	46	125	10	34	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	t0002	995	82	25	15	34	4	4	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	t0003	995	7	0	0	7	0	0	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	t0004	995	2	2	0	0	0	0	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	t0005	995	1	0	0	1	0	0	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	t0006	995	1	0	0	1	0	0	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	t0007	995	1	0	1	0	0	0	copy fasta	ERLEC1	chr2	53782044	53823796
ERLIN1_chr10_100145094_100191029	1/0	t0001	2441	159	20	27	79	5	27	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0002	2440	103	25	8	63	1	6	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/1	t0003	2440	45	9	24	10	0	1	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0004	2440	25	9	0	15	0	1	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0005	2440	22	20	2	0	0	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0006	2440	9	2	0	5	2	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0007	2440	7	0	0	7	0	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0008	2440	3	3	0	0	0	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0009	2440	2	0	0	0	0	2	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0010	2441	2	0	0	2	0	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0011	2441	1	1	0	0	0	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0012	2441	1	1	0	0	0	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0013	2440	1	1	0	0	0	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0014	2441	1	0	0	1	0	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0015	2441	1	0	0	1	0	0	copy fasta	ERLIN1	chr10	100145094	100191029