JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERLIN1_chr10_100145094_100191029	0/0	t0016	2441	1	0	1	0	0	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0017	2440	1	1	0	0	0	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0018	2441	1	0	0	0	0	1	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	t0019	2440	1	0	0	1	0	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN2_chr8_37731634_37763422	0/0	t0001	4368	103	31	27	27	5	13	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0002	4369	41	2	19	17	0	3	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0003	4367	37	6	2	25	1	3	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0004	4367	5	5	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0005	4367	3	3	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0006	4369	3	3	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0007	4368	2	2	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0008	4369	2	0	2	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0009	4368	2	2	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0010	4368	2	0	0	2	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0011	4367	2	2	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0012	4368	2	2	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0013	4368	1	0	0	1	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0014	4368	1	1	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0015	4368	1	0	1	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0016	4368	1	0	1	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0017	4368	1	0	1	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0018	4368	1	0	1	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0019	4367	1	1	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0020	4367	1	0	0	1	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0021	4367	1	0	0	1	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0022	4367	1	0	1	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0023	4367	1	1	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0024	4368	1	1	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0025	4367	1	0	0	0	0	1	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0026	4368	1	1	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0027	4368	1	1	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0028	4367	1	1	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0029	4368	1	0	1	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0030	4368	1	1	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0031	4367	1	1	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	t0032	4355	1	1	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERMAP_chr1_42812122_42849991	0/1	t0001	2014	126	21	19	55	7	23	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0002	2014	84	26	7	44	2	5	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0003	2013	64	8	18	28	1	9	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0004	2013	31	0	5	26	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0005	2013	30	4	13	0	4	9	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0006	2013	12	8	0	4	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0007	2013	7	7	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0008	2013	5	0	0	5	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0009	2013	4	3	1	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0010	2013	3	0	0	3	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0011	2013	2	1	1	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0012	2013	2	0	2	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0013	2013	2	2	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0014	2013	2	2	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991