Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCC5_chr3_183914934_184022884	1/0	t0002	1477	84	22	15	26	6	14	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0003	1477	56	1	3	41	1	10	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0004	1477	27	24	3	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0005	1473	26	0	0	25	0	1	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0006	1477	13	8	5	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0007	1473	8	7	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0008	1477	6	5	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0009	1477	3	2	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0010	1477	3	3	0	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0011	1477	3	0	1	0	0	2	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0012	1477	2	2	0	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0013	1477	2	0	0	0	2	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0014	1477	1	1	0	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0015	1477	1	0	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0016	1477	1	0	0	1	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0017	1477	1	0	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	t0018	1473	1	1	0	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC6_chr16_16144565_16228494	0/0	t0001	629	313	80	63	125	16	29	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/1	t0002	629	22	0	3	8	2	8	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	t0003	629	6	6	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	t0004	629	4	0	2	2	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	t0005	630	3	0	1	1	0	1	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	t0006	629	2	1	1	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	t0007	629	2	0	0	2	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	t0008	629	1	0	0	1	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	t0009	629	1	0	0	1	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	t0010	629	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	t0011	630	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	t0012	629	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC8_chr11_17387885_17481845	1/1	t0001	176	318	74	62	120	14	46	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	t0002	176	9	8	1	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	t0003	176	2	1	1	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	t0004	176	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC9_chr12_21792389_21946426	1/1	t0001	4019	167	52	27	63	7	16	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0002	4017	7	7	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0003	4019	5	0	3	0	2	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0004	4018	4	4	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0005	4015	3	3	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0006	4013	3	0	3	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0007	4019	2	2	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0008	4019	2	2	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0009	4019	2	2	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0010	4019	2	0	0	2	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0011	4019	2	2	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0012	4017	1	1	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0013	4019	1	1	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0014	4018	1	1	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0015	4019	1	0	0	1	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0016	4019	1	1	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0017	4019	1	0	0	1	0	0	copy fasta	ABCC9	chr12	21792389	21946426