Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AHRR_chr5_316714_443285	0/0	t0039	3583	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0040	3659	1	0	0	0	0	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0041	3568	1	0	0	1	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0042	3659	1	0	1	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0043	3603	1	0	0	0	0	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0044	3642	1	0	0	0	0	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0045	3792	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0046	3792	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0047	3718	1	0	1	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0048	3643	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0049	3643	1	0	1	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0050	3643	1	0	1	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0051	3643	1	0	0	1	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0052	3683	1	0	0	0	0	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0053	3641	1	0	1	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0054	3641	1	0	1	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0055	3642	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0056	3568	1	0	1	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0057	3568	1	0	0	1	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0058	3568	1	0	0	0	0	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0059	3643	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0060	3568	1	0	0	0	0	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0061	3568	1	0	0	0	0	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0062	3568	1	0	0	1	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0063	3568	1	0	0	1	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	t0064	3608	1	0	0	1	0	0	copy fasta	AHRR	chr5	316714	443285
AHR_chr7_17293652_17351147	0/0	t0001	3698	106	22	24	43	6	11	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0002	3696	67	6	8	45	2	6	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	1/1	t0003	3697	57	2	13	33	3	4	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0004	3697	32	12	11	6	0	3	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0005	3698	15	5	4	3	1	2	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0006	3696	13	0	0	12	0	1	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0007	3697	9	8	1	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0008	3697	9	9	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0009	3697	4	3	1	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0010	3697	4	0	0	4	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0011	3697	3	3	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0012	3696	3	3	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0013	3698	3	3	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0014	3699	3	1	0	2	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0015	3698	3	2	0	0	1	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0016	3696	3	2	1	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0017	3696	2	2	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0018	3697	2	0	2	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0019	3697	2	0	0	0	0	2	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0020	3698	2	0	0	2	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0021	3696	2	2	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0022	3697	2	0	0	2	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0023	3696	1	0	1	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0024	3697	1	0	1	0	0	0	copy fasta	AHR	chr7	17293652	17351147