JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERMAP_chr1_42812122_42849991	0/0	t0015	2013	2	2	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	1/0	t0016	2013	2	1	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0017	2013	1	1	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0018	2014	1	1	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0019	2013	1	0	0	1	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0020	4527	1	1	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0021	2014	1	1	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0022	2014	1	1	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0023	2014	1	0	0	1	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	t0024	2014	1	0	0	1	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMARD_chr6_169746622_169786600	0/1	t0001	124	378	94	74	157	14	38	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	t0002	124	1	0	0	1	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMN_chr2_157313631_157330824	1/1	t0001	2823	249	24	61	116	12	34	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0002	2823	57	46	4	3	0	4	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0003	2823	13	0	2	8	0	3	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0004	2823	13	13	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0005	2823	8	0	8	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0006	2823	3	3	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0007	2823	3	3	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0008	2823	3	0	0	3	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0009	2823	3	0	0	3	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0010	2823	2	0	2	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0011	2823	2	0	0	2	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0012	2823	2	0	0	2	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0013	2823	1	0	0	1	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0014	2823	1	1	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0015	2823	1	0	0	1	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0016	2823	1	0	0	0	0	1	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0017	2823	1	0	0	1	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0018	2823	1	1	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0019	2823	1	1	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0020	2823	1	1	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0021	2823	1	1	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	t0022	2823	1	0	1	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMP1_chr9_5779572_5838117	1/1	t0001	2663	179	27	28	101	4	17	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0002	2663	99	14	17	50	4	14	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0003	2660	17	11	4	0	0	2	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0004	2663	14	0	2	11	0	1	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0005	2663	8	8	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0006	2663	7	6	1	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0007	2660	5	5	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0008	2663	4	3	1	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0009	2659	4	4	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0010	2668	4	2	2	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0011	2663	3	0	0	1	0	2	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0012	2663	3	3	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0013	2672	3	0	3	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0014	2663	2	0	0	2	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0015	2663	2	0	0	2	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0016	2663	2	2	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117