JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERMP1_chr9_5779572_5838117	0/0	t0017	2663	1	0	1	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0018	2663	1	0	0	1	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0019	2663	1	0	1	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0020	2663	1	0	0	0	0	1	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0021	2659	1	1	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0022	2663	1	0	1	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0023	2663	1	1	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0024	2663	1	1	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0025	2663	1	1	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0026	2663	1	0	0	0	0	1	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0027	2664	1	0	0	0	0	1	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0028	2663	1	0	1	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0029	2660	1	1	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0030	2668	1	1	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0031	2668	1	1	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0032	2663	1	0	0	0	0	1	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0033	2663	1	0	1	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0034	2690	1	0	0	1	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0035	2663	1	0	1	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0036	2663	1	1	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0037	2660	1	1	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	t0038	2663	1	0	0	1	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERN1_chr17_64034142_64135144	0/0	t0001	4962	56	12	12	22	1	9	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/1	t0002	4962	51	7	17	15	4	7	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0003	4962	30	5	8	13	2	2	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0004	4962	17	14	3	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	1/0	t0005	4962	11	9	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0006	4961	9	7	2	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0007	4962	6	0	5	0	1	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0008	4962	5	5	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0009	4962	5	5	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0010	4962	5	5	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0011	4962	3	2	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0012	4962	3	3	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0013	4962	2	2	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0014	4962	2	2	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0015	4961	2	2	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0016	4962	2	0	2	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0017	4962	2	0	0	2	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0018	4962	2	1	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0019	4962	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0020	4962	1	0	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0021	4962	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0022	4961	1	0	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0023	4961	1	0	0	0	1	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0024	4961	1	0	0	0	0	1	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0025	4962	1	0	0	0	1	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0026	4962	1	0	0	1	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0027	4962	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0028	4962	1	0	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144