JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERN1_chr17_64034142_64135144	0/0	t0029	4962	1	0	0	0	0	1	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0030	4962	1	0	0	1	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0031	4962	1	0	0	1	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0032	4962	1	0	0	1	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0033	4964	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0034	4962	1	0	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0035	4962	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0036	4962	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0037	4964	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0038	4964	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	t0039	4962	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN2_chr16_23685310_23718222	1/1	t0001	557	248	53	47	109	7	30	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	t0002	570	107	13	11	67	4	12	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	t0003	570	36	17	13	1	1	4	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	t0004	558	10	2	1	7	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	t0005	570	5	1	4	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	t0006	571	3	0	0	3	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	t0007	570	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	t0008	570	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	t0009	571	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERO1A_chr14_52634915_52700558	0/0	t0001	3733	117	16	25	57	7	12	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/1	t0002	3733	72	23	9	29	2	8	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0003	3734	54	8	3	37	1	5	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0004	3734	33	6	4	16	0	7	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0005	3737	21	0	0	21	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0006	3733	13	10	3	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0007	3733	9	0	4	5	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0008	3735	8	1	1	3	0	3	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0009	3733	7	0	3	4	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	1/0	t0010	3733	7	0	3	0	2	1	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0011	3733	7	7	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0012	3735	6	6	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0013	3734	5	0	3	0	1	1	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0014	3736	3	2	1	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0015	3733	3	3	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0016	3733	2	0	0	2	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0017	3732	2	2	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0018	3733	2	0	0	0	2	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0019	3733	2	2	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0020	3735	2	0	0	2	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0021	3734	1	0	0	1	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0022	3732	1	0	1	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0023	3732	1	1	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0024	3734	1	0	0	1	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0025	3734	1	0	0	1	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0026	3738	1	0	0	1	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0027	3732	1	0	1	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0028	3732	1	1	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0029	3734	1	0	0	0	1	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0030	3733	1	0	1	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558