JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERO1A_chr14_52634915_52700558	0/0	t0031	3734	1	0	0	1	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0032	3736	1	1	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0033	3735	1	1	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0034	3735	1	1	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0035	3736	1	1	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0036	3732	1	0	0	1	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0037	3733	1	0	0	1	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0038	3733	1	1	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0039	3732	1	1	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0040	3734	1	1	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0041	3734	1	0	0	0	0	1	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0042	3735	1	1	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	t0043	3736	1	0	0	1	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1B_chr1_236210101_236286958	0/0	t0001	3559	74	8	15	47	2	2	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0002	3559	46	0	7	33	1	5	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0003	3559	36	3	12	16	0	5	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/1	t0004	3591	36	0	13	6	3	13	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0005	3559	26	7	1	17	1	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0006	3591	25	2	6	9	5	3	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0007	3564	15	7	0	7	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0008	3564	7	5	1	1	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0009	3564	6	0	2	1	0	3	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0010	3587	6	6	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0011	3586	5	3	2	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0012	3591	5	0	1	4	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0013	3588	4	4	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0014	3586	4	4	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0015	3586	4	1	3	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0016	3559	3	2	1	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0017	3559	3	0	0	3	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0018	3564	3	0	0	2	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0019	3564	3	0	0	1	0	2	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0020	3559	3	0	1	2	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0021	3564	3	2	0	1	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0022	3559	3	3	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0023	3586	3	0	1	1	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0024	3586	3	0	0	2	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0025	3598	3	2	1	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0026	3559	3	3	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0027	3586	3	3	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0028	3591	3	2	1	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0029	3588	2	2	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0030	3586	2	1	1	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0031	3559	2	0	2	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0032	3559	2	1	1	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0033	3559	2	0	0	2	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0034	3559	2	0	0	2	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0035	3559	2	0	0	2	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0036	3559	2	0	0	2	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0037	3560	2	2	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958