JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERO1B_chr1_236210101_236286958	0/0	t0038	3586	2	2	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0039	3586	2	2	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0040	3591	2	0	0	2	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0041	3586	2	2	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0042	3588	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0043	3586	1	0	0	1	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0044	3564	1	0	1	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0045	3564	1	0	0	1	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0046	3559	1	0	0	1	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0047	3559	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0048	3558	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0049	3559	1	0	0	0	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0050	3559	1	0	0	1	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0051	3559	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0052	3559	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0053	3559	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0054	3564	1	0	0	0	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0055	3559	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0056	3559	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0057	3559	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0058	3559	1	0	0	1	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0059	3559	1	0	0	1	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0060	3586	1	0	0	0	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0061	3586	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0062	3591	1	0	0	0	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0063	3591	1	0	0	0	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0064	3586	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0065	3591	1	0	0	0	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0066	3591	1	0	0	0	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0067	3591	1	0	1	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0068	3586	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0069	3591	1	0	0	1	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0070	3587	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0071	3586	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	1/0	t0072	3591	1	0	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	t0073	3586	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERP27_chr12_14909039_14943537	0/1	t0001	730	174	50	38	65	7	13	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	1/0	t0002	726	80	17	24	26	5	7	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0003	732	73	0	6	48	1	18	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0004	730	26	11	1	10	0	4	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0005	728	9	3	3	1	0	2	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0006	726	9	1	5	1	2	0	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0007	732	7	0	0	7	0	0	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0008	730	5	5	0	0	0	0	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0009	730	5	0	0	4	0	1	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0010	730	3	3	0	0	0	0	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0011	724	3	0	0	3	0	0	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0012	732	3	3	0	0	0	0	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0013	688	2	0	0	0	1	1	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0014	728	1	1	0	0	0	0	copy fasta	ERP27	chr12	14909039	14943537