JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERP27_chr12_14909039_14943537	0/0	t0015	732	1	0	1	0	0	0	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	t0016	730	1	0	0	1	0	0	copy fasta	ERP27	chr12	14909039	14943537
ERP29_chr12_112008426_112028449	0/0	t0001	838	224	58	20	136	1	9	copy fasta	ERP29	chr12	112008426	112028449
ERP29_chr12_112008426_112028449	1/1	t0002	838	168	39	41	38	9	39	copy fasta	ERP29	chr12	112008426	112028449
ERP29_chr12_112008426_112028449	0/0	t0003	838	4	0	0	4	0	0	copy fasta	ERP29	chr12	112008426	112028449
ERP29_chr12_112008426_112028449	0/0	t0004	838	1	0	1	0	0	0	copy fasta	ERP29	chr12	112008426	112028449
ERP29_chr12_112008426_112028449	0/0	t0005	838	1	1	0	0	0	0	copy fasta	ERP29	chr12	112008426	112028449
ERP44_chr9_99974185_100104000	0/0	t0001	3590	89	17	20	35	5	12	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/1	t0002	3594	62	14	15	20	3	9	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0003	3590	31	24	6	0	1	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0004	3591	8	8	0	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0005	3589	5	0	5	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0006	3591	4	3	1	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0007	3593	4	0	1	0	2	1	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0008	3591	3	1	2	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0009	3586	2	0	2	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0010	3590	2	1	1	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0011	3594	1	0	1	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0012	3591	1	1	0	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0013	3590	1	1	0	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0014	3590	1	1	0	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0015	3590	1	0	0	1	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0016	3590	1	1	0	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0017	3594	1	0	0	1	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0018	3594	1	0	0	0	1	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	1/0	t0019	3588	1	0	0	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	t0020	3594	1	0	0	1	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERRFI1_chr1_8006727_8031309	1/0	t0001	1709	317	73	43	173	7	20	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	t0002	1709	34	3	17	1	6	7	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/1	t0003	1707	28	3	4	16	2	2	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	t0004	1709	10	10	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	t0005	1709	3	3	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	t0006	1709	2	0	2	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	t0007	1709	2	0	0	0	1	1	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	t0008	1709	1	0	0	1	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	t0009	1709	1	0	0	0	0	1	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	t0010	1709	1	0	0	1	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	t0011	1709	1	0	0	0	0	1	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	t0012	1709	1	0	1	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	t0013	1709	1	0	1	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERV3-1_chr7_64985356_65011687	0/1	t0001	1393	190	20	48	95	8	18	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0002	1392	176	35	19	88	10	24	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0003	1392	32	0	5	27	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	1/0	t0004	1392	20	18	1	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0005	1392	7	5	2	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0006	1393	6	1	1	0	0	4	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0007	1392	5	5	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0008	1393	5	0	0	5	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0009	1392	4	4	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0010	1392	3	2	1	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687