JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERV3-1_chr7_64985356_65011687	0/0	t0011	1393	2	2	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0012	1392	1	1	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0013	1392	1	1	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0014	1392	1	0	0	1	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0015	1393	1	0	0	1	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0016	1393	1	0	1	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0017	1393	1	1	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0018	1392	1	0	0	1	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	t0019	1392	1	1	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERVFRD-1_chr6_11097489_11116725	0/0	t0001	1575	109	20	13	69	1	6	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/1	t0002	1575	105	1	18	68	3	14	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	1/0	t0003	1575	60	17	14	16	3	9	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0004	1575	53	18	3	30	0	2	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0005	1575	52	30	12	1	2	7	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0006	1575	19	1	7	0	8	3	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0007	1575	15	2	1	6	1	5	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0008	1575	2	1	1	0	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0009	1575	2	0	0	2	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0010	1575	1	0	0	1	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0011	1575	1	0	0	0	0	1	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0012	1575	1	1	0	0	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0013	1575	1	1	0	0	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0014	1575	1	0	0	1	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0015	1575	1	0	0	1	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0016	1575	1	0	0	0	0	1	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0017	1575	1	0	0	1	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	t0018	1575	1	0	1	0	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVH48-1_chr21_42911803_42930630	1/0	t0001	2292	169	9	41	94	3	21	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0002	2292	47	4	5	33	2	3	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0003	2292	42	0	4	29	1	8	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/1	t0004	2292	35	25	7	0	2	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0005	2292	27	0	8	9	3	7	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0006	2292	17	5	5	0	4	3	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0007	2292	13	13	0	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0008	2292	9	8	1	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0009	2292	8	0	0	8	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0010	2292	7	5	2	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0011	2292	7	0	1	6	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0012	2292	6	0	0	6	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0013	2292	4	3	1	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0014	2292	3	0	0	3	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0015	2292	2	2	0	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0016	2292	2	0	0	0	1	1	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0017	2292	2	1	1	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0018	2292	2	2	0	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0019	2292	1	1	0	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0020	2292	1	1	0	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0021	2292	1	0	1	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0022	2292	1	1	0	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0023	2292	1	1	0	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630