JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERVH48-1_chr21_42911803_42930630	0/0	t0024	2292	1	0	0	0	0	1	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0025	2292	1	1	0	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0026	2292	1	0	0	1	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0027	2292	1	0	0	1	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0028	2292	1	0	1	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0029	2292	1	1	0	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0030	2292	1	1	0	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0031	2292	1	0	0	1	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0032	2292	1	0	0	1	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0033	2292	1	0	0	1	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0034	2292	1	0	0	1	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0035	2292	1	1	0	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	t0036	2292	1	1	0	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVK3-1_chr19_58300377_58321812	1/1	t0001	2231	169	19	44	72	8	24	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0002	2231	70	23	11	30	2	4	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0003	2231	54	13	4	30	0	7	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0004	2231	44	3	10	25	1	5	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0005	2231	13	13	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0006	2231	13	0	0	13	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0007	2231	12	1	0	9	1	1	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0008	2231	6	0	5	0	1	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0009	2231	5	3	2	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0010	2231	3	2	1	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0011	2231	3	3	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0012	2231	3	0	0	0	3	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0013	2231	3	2	0	0	0	1	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0014	2231	3	3	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0015	2231	2	2	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0016	2231	1	0	0	1	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0017	2231	1	0	1	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0018	2231	1	0	0	1	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0019	2231	1	0	0	1	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0020	2231	1	0	1	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0021	2231	1	1	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0022	2231	1	0	0	0	0	1	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0023	2231	1	0	1	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0024	2231	1	0	0	1	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0025	2231	1	1	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0026	2231	1	0	0	1	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0027	2231	1	1	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0028	2231	1	1	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0029	2231	1	1	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0030	2231	1	1	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0031	2231	1	0	0	1	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0032	2198	1	0	0	0	0	1	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0033	2231	1	1	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0034	2231	1	1	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0035	2231	1	0	0	1	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	t0036	2231	1	1	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVMER34-1_chr4_52737553_52756425	1/1	t0001	1923	296	63	54	133	9	35	copy fasta	ERVMER34-1	chr4	52737553	52756425