JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERVMER34-1_chr4_52737553_52756425	0/0	t0002	1924	56	10	14	26	4	2	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0003	1924	7	3	1	0	1	2	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0004	1924	6	6	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0005	1923	5	0	0	5	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0006	1923	5	0	5	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0007	1923	3	0	3	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0008	1923	2	2	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0009	1924	1	1	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0010	1924	1	1	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0011	1923	1	0	1	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0012	1924	1	1	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0013	1923	1	1	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0014	1923	1	0	0	1	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0015	1923	1	1	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0016	1923	1	0	0	1	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0017	1923	1	0	1	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0018	1923	1	1	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0019	1923	1	0	1	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	t0020	1923	1	0	0	0	0	1	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVV-1_chr19_53008921_53021123	1/1	t0001	770	367	67	74	167	16	41	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	t0002	770	14	13	1	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	t0003	770	11	11	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	t0004	770	2	2	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	t0005	770	2	0	2	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	t0006	770	2	2	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	t0007	817	1	1	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	t0008	770	1	0	1	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	t0009	770	1	1	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	t0010	770	1	0	0	1	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	t0011	770	1	1	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	t0012	770	1	0	0	0	0	1	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-2_chr19_53039740_53056680	0/1	t0001	1418	103	17	30	44	2	9	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0002	1427	98	10	13	53	5	17	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	1/0	t0003	1426	52	7	1	38	0	5	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0004	1419	29	7	10	0	7	5	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0005	1428	28	3	4	19	0	2	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0006	1427	18	1	0	15	1	1	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0007	1419	15	2	4	7	1	1	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0008	1419	14	13	1	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0009	1426	8	0	1	3	0	4	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0010	1420	8	8	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0011	1418	6	0	6	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0012	1425	5	0	0	4	0	1	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0013	1427	5	0	5	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0014	1426	3	3	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0015	1445	3	3	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0016	1428	2	1	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0017	1443	2	2	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0018	1444	2	2	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0019	1449	2	2	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680