JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERVV-2_chr19_53039740_53056680	0/0	t0020	1419	2	2	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0021	1429	2	0	1	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0022	1426	2	2	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0023	1420	1	0	0	0	0	1	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0024	1417	1	0	1	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0025	1418	1	0	1	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0026	1419	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0027	1426	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0028	1417	1	0	0	0	0	1	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0029	1428	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0030	1419	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0031	1425	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0032	1426	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0033	1426	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0034	1426	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0035	1426	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0036	1427	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0037	1427	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0038	1427	1	0	1	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0039	1427	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0040	1428	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0041	1428	1	0	1	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0042	1428	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0043	1442	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0044	1428	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0045	1427	1	0	1	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0046	1419	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0047	1418	1	0	1	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0048	1419	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0049	1418	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0050	1417	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0051	1427	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0052	1427	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0053	1417	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0054	1418	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0055	1418	1	0	0	0	0	1	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0056	1418	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0057	1439	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0058	1445	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	t0059	1427	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVW-1_chr7_92463380_92482946	1/1	t0001	1178	289	55	66	126	9	31	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	t0002	1178	73	11	4	56	1	1	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	t0003	1178	37	7	8	11	4	7	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	t0004	1178	7	7	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	t0005	1178	4	0	0	4	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	t0006	1178	3	0	0	0	0	3	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	t0007	1178	2	2	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	t0008	1178	1	0	0	1	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	t0009	1178	1	1	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	t0010	1178	1	1	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946