Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AHR_chr7_17293652_17351147	0/0	t0025	3697	1	0	0	0	1	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0026	3696	1	0	0	1	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0027	3697	1	0	0	0	0	1	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0028	3760	1	0	0	1	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0029	3697	1	0	0	1	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0030	3697	1	0	0	0	1	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0031	3697	1	0	0	1	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0032	3698	1	0	0	1	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0033	3699	1	1	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0034	3698	1	0	0	1	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0035	3698	1	1	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0036	3698	1	0	0	0	0	1	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0037	3697	1	1	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0038	3696	1	0	0	1	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0039	3698	1	1	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0040	3698	1	0	0	0	0	1	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0041	3698	1	0	0	1	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0042	3698	1	0	0	0	0	1	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0043	3697	1	0	1	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0044	3698	1	0	0	0	0	1	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0045	3697	1	1	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	t0046	3698	1	0	0	0	1	0	copy fasta	AHR	chr7	17293652	17351147
AHSA1_chr14_77453093_77474472	1/1	t0001	321	264	81	56	85	11	29	copy fasta	AHSA1	chr14	77453093	77474472
AHSA1_chr14_77453093_77474472	0/0	t0002	321	32	9	6	6	2	9	copy fasta	AHSA1	chr14	77453093	77474472
AHSA1_chr14_77453093_77474472	0/0	t0003	321	10	4	4	0	1	1	copy fasta	AHSA1	chr14	77453093	77474472
AHSA1_chr14_77453093_77474472	0/0	t0004	321	1	0	0	0	0	1	copy fasta	AHSA1	chr14	77453093	77474472
AHSA1_chr14_77453093_77474472	0/0	t0005	321	1	0	0	1	0	0	copy fasta	AHSA1	chr14	77453093	77474472
AHSG_chr3_186608060_186626318	1/1	t0001	471	429	94	83	189	18	43	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	t0002	471	6	0	3	0	0	3	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	t0003	471	2	2	0	0	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	t0004	471	1	1	0	0	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	t0005	471	1	1	0	0	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	t0006	471	1	0	0	1	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSP_chr16_31522900_31533803	1/1	t0001	180	346	91	70	131	13	39	copy fasta	AHSP	chr16	31522900	31533803
AHSP_chr16_31522900_31533803	0/0	t0002	180	42	7	4	27	3	1	copy fasta	AHSP	chr16	31522900	31533803
AICDA_chr12_8597170_8617859	0/1	t0001	2207	277	11	52	169	11	33	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0002	2208	57	6	19	19	5	8	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0003	2205	23	20	2	1	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0004	2207	12	12	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0005	2206	11	3	1	3	1	3	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0006	2204	11	6	4	0	0	1	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0007	2207	9	0	0	9	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0008	2209	9	9	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0009	2208	8	1	0	5	1	1	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0010	2207	7	7	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0011	2203	5	0	0	3	0	2	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0012	2207	5	5	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0013	2207	4	4	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0014	2207	4	2	0	2	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0015	2208	2	1	1	0	0	0	copy fasta	AICDA	chr12	8597170	8617859