JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERVW-1_chr7_92463380_92482946	0/0	t0011	1178	1	0	0	1	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	t0012	1178	1	1	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	t0013	1178	1	0	0	1	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	t0014	1178	1	1	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ESAM_chr11_124748126_124767290	1/1	t0001	657	257	12	61	132	13	37	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	t0002	657	165	77	16	60	3	9	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	t0003	657	5	5	0	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	t0004	657	1	1	0	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	t0005	657	1	1	0	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	t0006	657	1	0	1	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESCO1_chr18_21524284_21605704	1/1	t0001	1966	259	75	52	98	3	29	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0002	1966	31	9	7	5	3	7	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0003	1966	3	0	0	3	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0004	1963	3	0	0	3	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0005	1966	2	0	0	2	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0006	1966	2	2	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0007	1966	2	0	1	0	1	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0008	1966	1	1	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0009	1966	1	0	0	0	0	1	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0010	1966	1	1	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0011	1966	1	0	0	0	0	1	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0012	1966	1	1	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0013	1966	1	0	0	0	1	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0014	1966	1	1	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	t0015	1966	1	0	0	1	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO2_chr8_27769554_27810316	0/0	t0001	1628	38	5	2	31	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0002	1953	38	4	4	23	2	5	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0003	1951	36	10	4	17	2	3	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0004	1626	30	6	1	18	1	4	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0005	1950	27	0	15	1	5	6	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0006	1954	27	3	6	12	0	6	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0007	1630	22	0	2	17	0	3	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0008	1952	17	5	1	7	1	3	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0009	1938	15	2	5	0	1	7	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0010	1948	12	1	1	10	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0011	1955	11	0	1	9	0	1	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0012	1624	9	0	0	9	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0013	1956	7	0	1	5	0	1	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0014	1951	7	7	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0015	1950	6	6	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0016	1630	5	5	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0017	1632	5	1	0	4	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0018	1630	5	5	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0019	1951	5	0	3	0	0	2	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0020	1626	4	3	1	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0021	1624	4	3	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0022	1952	4	0	2	0	0	2	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/1	t0023	1950	4	3	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0024	1946	3	3	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0025	1946	3	3	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316