JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ESCO2_chr8_27769554_27810316	0/0	t0026	1949	3	1	0	2	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0027	1944	3	3	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	1/0	t0028	1949	3	2	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0029	1956	2	1	1	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0030	1953	2	1	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0031	1626	1	1	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0032	1626	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0033	1632	1	1	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0034	1626	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0035	1624	1	1	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0036	1954	1	0	1	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0037	1950	1	0	0	0	0	1	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0038	1952	1	1	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0039	1944	1	1	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0040	1979	1	1	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0041	1953	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0042	1955	1	0	1	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0043	1953	1	1	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0044	1954	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0045	1956	1	1	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0046	1935	1	0	1	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0047	1962	1	1	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0048	1955	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0049	1952	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0050	1955	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0051	1929	1	0	1	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0052	1952	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	t0053	1953	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESD_chr13_46766256_46802161	1/1	t0001	273	270	43	53	127	12	33	copy fasta	ESD	chr13	46766256	46802161
ESD_chr13_46766256_46802161	0/0	t0002	274	115	26	17	65	2	5	copy fasta	ESD	chr13	46766256	46802161
ESD_chr13_46766256_46802161	0/0	t0003	275	15	13	2	0	0	0	copy fasta	ESD	chr13	46766256	46802161
ESD_chr13_46766256_46802161	0/0	t0004	275	5	5	0	0	0	0	copy fasta	ESD	chr13	46766256	46802161
ESD_chr13_46766256_46802161	0/0	t0005	274	1	1	0	0	0	0	copy fasta	ESD	chr13	46766256	46802161
ESF1_chr20_13709325_13789919	0/0	t0001	633	317	45	54	164	13	41	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/1	t0002	633	40	18	7	9	1	4	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	1/0	t0003	633	16	10	3	1	1	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	t0004	633	6	6	0	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	t0005	633	4	0	0	3	0	1	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	t0006	633	3	3	0	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	t0007	633	1	0	0	0	1	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	t0008	633	1	0	0	1	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	t0009	633	1	0	0	0	0	1	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	t0010	633	1	0	0	0	0	1	copy fasta	ESF1	chr20	13709325	13789919
ESM1_chr5_54972867_54990593	0/0	t0001	1537	131	27	15	81	2	6	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	1/0	t0002	1542	102	2	24	50	9	16	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0003	1543	83	1	17	54	1	10	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/1	t0004	1537	45	31	3	6	1	3	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0005	1543	43	15	16	0	4	8	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0006	1544	6	0	0	4	0	2	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0007	1546	6	5	1	0	0	0	copy fasta	ESM1	chr5	54972867	54990593