JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ESM1_chr5_54972867_54990593	0/0	t0008	1542	5	4	1	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0009	1542	5	0	0	5	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0010	1543	3	0	0	2	0	1	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0011	1537	3	3	0	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0012	1542	2	2	0	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0013	1542	2	2	0	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0014	1543	1	1	0	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0015	1543	1	0	0	0	0	1	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0016	1537	1	0	0	0	0	1	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0017	1542	1	0	0	1	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0018	1544	1	1	0	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0019	1542	1	0	1	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0020	1542	1	0	0	1	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0021	1542	1	0	0	0	1	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0022	1543	1	1	0	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	t0023	1542	1	1	0	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESPL1_chr12_53263299_53298638	1/1	t0001	256	257	81	42	98	6	28	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	t0002	256	55	10	9	34	0	2	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	t0003	256	22	3	11	0	4	4	copy fasta	ESPL1	chr12	53263299	53298638
ESPNL_chr2_238095340_238138287	0/0	t0001	1636	74	18	14	26	2	14	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0002	1636	73	1	15	55	1	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0003	1636	61	28	16	10	1	6	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0004	1636	55	0	4	36	5	10	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/1	t0005	1636	49	1	24	12	3	8	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0006	1636	30	5	1	22	0	2	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0007	1636	14	11	3	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0008	1636	8	8	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0009	1635	8	0	2	6	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0010	1636	5	5	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0011	1636	4	4	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0012	1636	3	2	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0013	1636	3	0	0	1	0	2	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0014	1636	3	3	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0015	1636	2	2	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0016	1636	2	0	1	0	1	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0017	1636	2	0	0	2	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0018	1636	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0019	1636	1	0	0	0	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0020	1636	1	0	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0021	1636	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0022	1636	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0023	1636	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0024	1636	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0025	1636	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0026	1635	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	1/0	t0027	1636	1	0	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0028	1636	1	0	0	0	1	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	t0029	1636	1	0	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPN_chr1_6419776_6465944	1/1	t0001	979	133	12	43	53	6	17	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	t0002	979	77	56	11	4	1	5	copy fasta	ESPN	chr1	6419776	6465944