JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ESPN_chr1_6419776_6465944	0/0	t0003	979	51	17	6	24	0	4	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	t0004	979	3	1	1	0	1	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	t0005	979	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	t0006	979	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	t0007	979	1	0	0	1	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	t0008	979	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	t0009	979	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	t0010	979	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	t0011	979	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	t0012	979	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	t0013	979	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	t0014	979	1	0	1	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESR1_chr6_151802682_152108274	0/0	t0001	4541	70	19	8	31	1	11	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/1	t0002	4540	57	11	13	20	5	7	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0003	4540	22	2	5	13	1	1	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0004	4539	16	1	1	12	0	2	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0005	4540	15	4	1	8	1	1	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0006	4540	9	0	0	9	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0007	4541	6	4	0	0	0	2	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0008	4541	5	4	0	0	0	1	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0009	4540	5	5	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0010	4542	4	4	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0011	4540	4	4	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0012	4540	4	2	0	0	0	2	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0013	4540	4	4	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0014	4541	3	0	2	0	1	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0015	4540	2	2	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	1/0	t0016	4540	2	0	1	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0017	4541	2	1	0	1	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0018	4541	2	2	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0019	4540	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0020	4541	1	0	0	0	0	1	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0021	4540	1	0	0	1	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0022	4541	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0023	4541	1	0	0	1	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0024	4541	1	0	1	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0025	4541	1	0	0	1	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0026	4540	1	0	0	1	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0027	4540	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0028	4540	1	0	0	1	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0029	4540	1	0	0	1	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0030	4541	1	0	0	0	1	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0031	4540	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0032	4541	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0033	4541	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0034	4540	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0035	4540	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	t0036	4540	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR2_chr14_64223317_64299371	1/1	t0001	5250	65	2	14	35	3	9	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0002	5245	52	8	11	24	3	6	copy fasta	ESR2	chr14	64223317	64299371