JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ESR2_chr14_64223317_64299371	0/0	t0003	5251	26	0	0	26	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0004	5248	26	6	3	11	2	4	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0005	5252	16	0	1	14	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0006	5251	14	1	1	11	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0007	5244	11	0	8	1	2	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0008	5252	9	1	2	4	1	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0009	5250	5	5	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0010	5239	4	0	2	0	1	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0011	5249	4	4	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0012	5251	4	3	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0013	5251	4	4	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0014	5248	4	4	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0015	5251	4	1	2	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0016	5246	3	3	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0017	5246	3	0	1	0	0	2	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0018	5253	3	0	0	3	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0019	5251	3	3	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0020	5249	3	3	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0021	5248	3	3	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0022	5248	3	2	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0023	5249	3	2	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0024	5251	3	0	1	2	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0025	5251	3	2	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0026	5253	2	0	2	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0027	5247	2	0	2	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0028	5246	2	0	1	0	1	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0029	5246	2	0	0	2	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0030	5245	2	0	2	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0031	5250	2	2	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0032	5252	2	0	0	2	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0033	5252	2	0	1	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0034	5249	2	0	0	2	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0035	5250	2	2	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0036	5247	2	0	2	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0037	5251	2	0	0	0	0	2	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0038	5249	2	1	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0039	5250	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0040	5250	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0041	5246	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0042	5254	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0043	5254	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0044	5252	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0045	5252	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0046	5247	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0047	5248	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0048	5247	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0049	5245	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0050	5245	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0051	5245	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0052	5247	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371