JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ESR2_chr14_64223317_64299371	0/0	t0053	5251	1	0	0	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0054	5254	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0055	5250	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0056	5252	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0057	5250	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0058	5251	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0059	5249	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0060	5251	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0061	5252	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0062	5251	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0063	5253	1	0	0	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0064	5249	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0065	5245	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0066	5245	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0067	5243	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0068	5253	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0069	5250	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0070	5251	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0071	5253	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0072	5254	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0073	5248	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0074	5249	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0075	5249	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0076	5249	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0077	5250	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0078	5251	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0079	5252	1	0	0	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0080	5248	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0081	5248	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0082	5249	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0083	5251	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0084	5251	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0085	5250	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0086	5250	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0087	5250	1	0	0	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0088	5249	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0089	5250	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0090	5250	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0091	5250	1	0	0	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0092	5249	1	0	0	0	1	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0093	5249	1	0	0	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0094	5252	1	0	0	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0095	5250	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0096	5251	1	0	0	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0097	5263	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0098	5263	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0099	5263	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0100	5271	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0101	5245	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	t0102	5248	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371